finish ch2 (needs review) started ch3
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R/ch2.html
206
R/ch2.html
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@ -246,12 +246,12 @@ Probability and Likelihood
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<span id="cb7-9"><a href="#cb7-9" aria-hidden="true" tabindex="-1"></a> gt<span class="sc">::</span><span class="fu">cols_width</span>(<span class="fu">everything</span>() <span class="sc">~</span> <span class="fu">px</span>(<span class="dv">100</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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<div class="cell-output-display">
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<div id="elqrvmpvcc" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
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<div id="ytbjahccmx" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
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<style>html {
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font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
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}
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#elqrvmpvcc .gt_table {
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#ytbjahccmx .gt_table {
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display: table;
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border-collapse: collapse;
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margin-left: auto;
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@ -276,7 +276,7 @@ Probability and Likelihood
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border-left-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_heading {
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#ytbjahccmx .gt_heading {
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background-color: #FFFFFF;
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text-align: center;
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border-bottom-color: #FFFFFF;
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@ -288,7 +288,7 @@ Probability and Likelihood
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border-right-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_title {
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#ytbjahccmx .gt_title {
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color: #333333;
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font-size: 125%;
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font-weight: initial;
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@ -300,7 +300,7 @@ Probability and Likelihood
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border-bottom-width: 0;
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}
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#elqrvmpvcc .gt_subtitle {
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#ytbjahccmx .gt_subtitle {
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color: #333333;
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font-size: 85%;
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font-weight: initial;
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@ -312,13 +312,13 @@ Probability and Likelihood
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border-top-width: 0;
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}
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#elqrvmpvcc .gt_bottom_border {
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#ytbjahccmx .gt_bottom_border {
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border-bottom-style: solid;
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border-bottom-width: 2px;
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border-bottom-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_col_headings {
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#ytbjahccmx .gt_col_headings {
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border-top-style: solid;
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border-top-width: 2px;
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border-top-color: #D3D3D3;
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@ -333,7 +333,7 @@ Probability and Likelihood
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border-right-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_col_heading {
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#ytbjahccmx .gt_col_heading {
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color: #333333;
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background-color: #FFFFFF;
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font-size: 100%;
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@ -353,7 +353,7 @@ Probability and Likelihood
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overflow-x: hidden;
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}
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#elqrvmpvcc .gt_column_spanner_outer {
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#ytbjahccmx .gt_column_spanner_outer {
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color: #333333;
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background-color: #FFFFFF;
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font-size: 100%;
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@ -365,15 +365,15 @@ Probability and Likelihood
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padding-right: 4px;
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}
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#elqrvmpvcc .gt_column_spanner_outer:first-child {
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#ytbjahccmx .gt_column_spanner_outer:first-child {
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padding-left: 0;
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}
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#elqrvmpvcc .gt_column_spanner_outer:last-child {
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#ytbjahccmx .gt_column_spanner_outer:last-child {
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padding-right: 0;
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}
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#elqrvmpvcc .gt_column_spanner {
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#ytbjahccmx .gt_column_spanner {
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border-bottom-style: solid;
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border-bottom-width: 2px;
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border-bottom-color: #D3D3D3;
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@ -385,7 +385,7 @@ Probability and Likelihood
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width: 100%;
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}
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#elqrvmpvcc .gt_group_heading {
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#ytbjahccmx .gt_group_heading {
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padding-top: 8px;
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padding-bottom: 8px;
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padding-left: 5px;
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@ -410,7 +410,7 @@ Probability and Likelihood
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vertical-align: middle;
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}
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#elqrvmpvcc .gt_empty_group_heading {
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#ytbjahccmx .gt_empty_group_heading {
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padding: 0.5px;
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color: #333333;
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background-color: #FFFFFF;
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@ -425,15 +425,15 @@ Probability and Likelihood
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vertical-align: middle;
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}
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#elqrvmpvcc .gt_from_md > :first-child {
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#ytbjahccmx .gt_from_md > :first-child {
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margin-top: 0;
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}
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#elqrvmpvcc .gt_from_md > :last-child {
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#ytbjahccmx .gt_from_md > :last-child {
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margin-bottom: 0;
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}
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#elqrvmpvcc .gt_row {
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#ytbjahccmx .gt_row {
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padding-top: 8px;
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padding-bottom: 8px;
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padding-left: 5px;
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@ -452,7 +452,7 @@ Probability and Likelihood
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overflow-x: hidden;
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}
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#elqrvmpvcc .gt_stub {
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#ytbjahccmx .gt_stub {
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color: #333333;
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background-color: #FFFFFF;
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font-size: 100%;
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@ -465,7 +465,7 @@ Probability and Likelihood
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padding-right: 5px;
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}
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#elqrvmpvcc .gt_stub_row_group {
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#ytbjahccmx .gt_stub_row_group {
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color: #333333;
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background-color: #FFFFFF;
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font-size: 100%;
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@ -479,11 +479,11 @@ Probability and Likelihood
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vertical-align: top;
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}
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#elqrvmpvcc .gt_row_group_first td {
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#ytbjahccmx .gt_row_group_first td {
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border-top-width: 2px;
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}
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#elqrvmpvcc .gt_summary_row {
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#ytbjahccmx .gt_summary_row {
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color: #333333;
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background-color: #FFFFFF;
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text-transform: inherit;
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@ -493,16 +493,16 @@ Probability and Likelihood
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padding-right: 5px;
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}
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#elqrvmpvcc .gt_first_summary_row {
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#ytbjahccmx .gt_first_summary_row {
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border-top-style: solid;
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border-top-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_first_summary_row.thick {
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#ytbjahccmx .gt_first_summary_row.thick {
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border-top-width: 2px;
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}
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#elqrvmpvcc .gt_last_summary_row {
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#ytbjahccmx .gt_last_summary_row {
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padding-top: 8px;
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padding-bottom: 8px;
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padding-left: 5px;
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@ -512,7 +512,7 @@ Probability and Likelihood
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border-bottom-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_grand_summary_row {
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#ytbjahccmx .gt_grand_summary_row {
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color: #333333;
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background-color: #FFFFFF;
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text-transform: inherit;
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@ -522,7 +522,7 @@ Probability and Likelihood
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padding-right: 5px;
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}
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#elqrvmpvcc .gt_first_grand_summary_row {
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#ytbjahccmx .gt_first_grand_summary_row {
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padding-top: 8px;
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padding-bottom: 8px;
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padding-left: 5px;
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@ -532,11 +532,11 @@ Probability and Likelihood
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border-top-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_striped {
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#ytbjahccmx .gt_striped {
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background-color: rgba(128, 128, 128, 0.05);
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}
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#elqrvmpvcc .gt_table_body {
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#ytbjahccmx .gt_table_body {
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border-top-style: solid;
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border-top-width: 2px;
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border-top-color: #D3D3D3;
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@ -545,7 +545,7 @@ Probability and Likelihood
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border-bottom-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_footnotes {
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#ytbjahccmx .gt_footnotes {
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color: #333333;
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background-color: #FFFFFF;
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border-bottom-style: none;
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@ -559,7 +559,7 @@ Probability and Likelihood
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border-right-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_footnote {
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#ytbjahccmx .gt_footnote {
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margin: 0px;
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font-size: 90%;
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padding-left: 4px;
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@ -568,7 +568,7 @@ Probability and Likelihood
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padding-right: 5px;
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}
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#elqrvmpvcc .gt_sourcenotes {
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#ytbjahccmx .gt_sourcenotes {
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color: #333333;
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background-color: #FFFFFF;
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border-bottom-style: none;
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@ -582,7 +582,7 @@ Probability and Likelihood
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border-right-color: #D3D3D3;
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}
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#elqrvmpvcc .gt_sourcenote {
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#ytbjahccmx .gt_sourcenote {
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font-size: 90%;
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padding-top: 4px;
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padding-bottom: 4px;
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@ -590,64 +590,64 @@ Probability and Likelihood
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padding-right: 5px;
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}
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#elqrvmpvcc .gt_left {
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#ytbjahccmx .gt_left {
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text-align: left;
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}
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#elqrvmpvcc .gt_center {
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#ytbjahccmx .gt_center {
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text-align: center;
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}
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#elqrvmpvcc .gt_right {
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#ytbjahccmx .gt_right {
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text-align: right;
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font-variant-numeric: tabular-nums;
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}
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#elqrvmpvcc .gt_font_normal {
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#ytbjahccmx .gt_font_normal {
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font-weight: normal;
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}
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#elqrvmpvcc .gt_font_bold {
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#ytbjahccmx .gt_font_bold {
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font-weight: bold;
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}
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#elqrvmpvcc .gt_font_italic {
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#ytbjahccmx .gt_font_italic {
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font-style: italic;
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}
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#elqrvmpvcc .gt_super {
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#ytbjahccmx .gt_super {
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font-size: 65%;
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}
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#elqrvmpvcc .gt_footnote_marks {
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#ytbjahccmx .gt_footnote_marks {
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font-style: italic;
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font-weight: normal;
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font-size: 75%;
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vertical-align: 0.4em;
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}
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#elqrvmpvcc .gt_asterisk {
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#ytbjahccmx .gt_asterisk {
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font-size: 100%;
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vertical-align: 0;
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}
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#elqrvmpvcc .gt_indent_1 {
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#ytbjahccmx .gt_indent_1 {
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text-indent: 5px;
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}
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#elqrvmpvcc .gt_indent_2 {
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#ytbjahccmx .gt_indent_2 {
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text-indent: 10px;
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}
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#elqrvmpvcc .gt_indent_3 {
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#ytbjahccmx .gt_indent_3 {
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text-indent: 15px;
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}
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#elqrvmpvcc .gt_indent_4 {
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#ytbjahccmx .gt_indent_4 {
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text-indent: 20px;
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}
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#elqrvmpvcc .gt_indent_5 {
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#ytbjahccmx .gt_indent_5 {
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text-indent: 25px;
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}
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</style>
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@ -856,12 +856,12 @@ Baye’s Rule
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<span id="cb10-8"><a href="#cb10-8" aria-hidden="true" tabindex="-1"></a> gt<span class="sc">::</span><span class="fu">cols_width</span>(<span class="fu">everything</span>() <span class="sc">~</span> <span class="fu">px</span>(<span class="dv">100</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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<div class="cell-output-display">
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<div id="szamjwnxyf" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
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<div id="yyakhpsztb" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
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<style>html {
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font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
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}
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#szamjwnxyf .gt_table {
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#yyakhpsztb .gt_table {
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display: table;
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border-collapse: collapse;
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margin-left: auto;
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@ -886,7 +886,7 @@ Baye’s Rule
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border-left-color: #D3D3D3;
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}
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#szamjwnxyf .gt_heading {
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#yyakhpsztb .gt_heading {
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background-color: #FFFFFF;
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text-align: center;
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border-bottom-color: #FFFFFF;
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@ -898,7 +898,7 @@ Baye’s Rule
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border-right-color: #D3D3D3;
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}
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#szamjwnxyf .gt_title {
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#yyakhpsztb .gt_title {
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color: #333333;
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font-size: 125%;
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font-weight: initial;
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@ -910,7 +910,7 @@ Baye’s Rule
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border-bottom-width: 0;
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}
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#szamjwnxyf .gt_subtitle {
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#yyakhpsztb .gt_subtitle {
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color: #333333;
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font-size: 85%;
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font-weight: initial;
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@ -922,13 +922,13 @@ Baye’s Rule
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border-top-width: 0;
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}
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#szamjwnxyf .gt_bottom_border {
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#yyakhpsztb .gt_bottom_border {
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border-bottom-style: solid;
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border-bottom-width: 2px;
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border-bottom-color: #D3D3D3;
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}
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#szamjwnxyf .gt_col_headings {
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#yyakhpsztb .gt_col_headings {
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border-top-style: solid;
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border-top-width: 2px;
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border-top-color: #D3D3D3;
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@ -943,7 +943,7 @@ Baye’s Rule
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border-right-color: #D3D3D3;
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}
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#szamjwnxyf .gt_col_heading {
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#yyakhpsztb .gt_col_heading {
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color: #333333;
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background-color: #FFFFFF;
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font-size: 100%;
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@ -963,7 +963,7 @@ Baye’s Rule
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overflow-x: hidden;
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}
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#szamjwnxyf .gt_column_spanner_outer {
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#yyakhpsztb .gt_column_spanner_outer {
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color: #333333;
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background-color: #FFFFFF;
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font-size: 100%;
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@ -975,15 +975,15 @@ Baye’s Rule
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padding-right: 4px;
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}
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#szamjwnxyf .gt_column_spanner_outer:first-child {
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#yyakhpsztb .gt_column_spanner_outer:first-child {
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padding-left: 0;
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}
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#szamjwnxyf .gt_column_spanner_outer:last-child {
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#yyakhpsztb .gt_column_spanner_outer:last-child {
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padding-right: 0;
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}
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#szamjwnxyf .gt_column_spanner {
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#yyakhpsztb .gt_column_spanner {
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border-bottom-style: solid;
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border-bottom-width: 2px;
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border-bottom-color: #D3D3D3;
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@ -995,7 +995,7 @@ Baye’s Rule
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width: 100%;
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}
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#szamjwnxyf .gt_group_heading {
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#yyakhpsztb .gt_group_heading {
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padding-top: 8px;
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padding-bottom: 8px;
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padding-left: 5px;
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@ -1020,7 +1020,7 @@ Baye’s Rule
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vertical-align: middle;
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}
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#szamjwnxyf .gt_empty_group_heading {
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#yyakhpsztb .gt_empty_group_heading {
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padding: 0.5px;
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color: #333333;
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background-color: #FFFFFF;
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@ -1035,15 +1035,15 @@ Baye’s Rule
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vertical-align: middle;
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}
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#szamjwnxyf .gt_from_md > :first-child {
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#yyakhpsztb .gt_from_md > :first-child {
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|
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<td class="gt_row gt_right">0.413</td></tr>
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<td class="gt_row gt_right">4037</td>
|
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<tr><td class="gt_row gt_left">real</td>
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@ -1318,8 +1318,8 @@ Baye’s Rule
|
|||
# Groups: usage [2]
|
||||
usage fake real
|
||||
<chr> <int> <int>
|
||||
1 no 3026 5732
|
||||
2 yes 1104 138</code></pre>
|
||||
1 no 2919 5824
|
||||
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|
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@ -1346,8 +1346,8 @@ Baye’s Rule
|
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<pre><code># A tibble: 2 × 3
|
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type total prop
|
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|
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|
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|
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|
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|
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|
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<pre><code># A tibble: 3 × 3
|
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pi n prop
|
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<dbl> <int> <dbl>
|
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|
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|
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1 0.2 344 0.604
|
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<h1 class="title">Chapter 3 Beta-Binomial Bayesian Model Notes</h1>
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<p>Emanuel Rodriguez </p>
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<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(bayesrules)</span>
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<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidyverse)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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</div>
|
||||
<p>The chapter is set up with an example of polling results. We are put into the scenario where we are managig the campaing for a candidate. We know that on average her support based on recent polls is around 45%. In the next few sections we’ll work through our Bayesian framework and incorporate a new tool the <strong>Beta-Binomial</strong> model. This model will take develop a continuous prior, as opposed to the discrete one’s we’ve been working with so far.</p>
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Probability Density Function
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<p>Let <span class="math inline">\pi</span> be a continuous random variable with probability density function (pdf) <span class="math inline">f(\pi)</span>. Then <span class="math inline">f(\pi)</span> has the following properties:</p>
|
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|
||||
<li><span class="math inline">f(\pi) \geq 0</span></li>
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|
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<li><span class="math inline">P(a < \pi < b) = \int_a^bf(\pi)d\pi</span> when <span class="math inline">a\leq b</span></li>
|
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</ol>
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Tip
|
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|
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<p>a quick note on (1) above. Note that it does not place a restriction on <span class="math inline">f(\pi)</span> being less than 1. This means that we can’t interpret values of <span class="math inline">f</span> as probabilities, we can however use to interpret plausability of two different events, the greater the value of <span class="math inline">f</span> the more plausible. To calculate probabilities using <span class="math inline">f</span> we must determine the area under the curve it defines, as shown in (3).</p>
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|
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@ -0,0 +1,53 @@
|
|||
---
|
||||
title: "Chapter 3 Beta-Binomial Bayesian Model Notes"
|
||||
author: "Emanuel Rodriguez"
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---
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```{r}
|
||||
library(bayesrules)
|
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library(tidyverse)
|
||||
```
|
||||
|
||||
The chapter is set up with an example of polling results. We are put into
|
||||
the scenario where we are managig the campaing for a candidate. We know
|
||||
that on average her support based on recent polls is around 45%. In the
|
||||
next few sections we'll work through our Bayesian framework and incorporate
|
||||
a new tool the **Beta-Binomial** model. This model will take develop a
|
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continuous prior, as opposed to the discrete one's we've been working with
|
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so far.
|
||||
|
||||
|
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## The Beta prior
|
||||
|
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:::{.callout-note}
|
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## Probability Density Function
|
||||
|
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Let $\pi$ be a continuous random variable with probability density
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function (pdf) $f(\pi)$. Then $f(\pi)$ has the following properties:
|
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|
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1. $f(\pi) \geq 0$
|
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2. $\int_{\pi}f(\pi)d\pi = 1$ (this is analogous to $\sum$ in the case of pmfs)
|
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|
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:::
|
||||
|
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To calculate probabilities using $f$ we must determine the area under the
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curve it defines, as shown in (3).
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||||
:::
|
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|
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||||
});
|
||||
|
||||
const sections = tocLinks.map((link) => {
|
||||
const target = link.getAttribute("data-scroll-target");
|
||||
if (target.startsWith("#")) {
|
||||
return window.document.getElementById(decodeURI(`${target.slice(1)}`));
|
||||
} else {
|
||||
return window.document.querySelector(decodeURI(`${target}`));
|
||||
}
|
||||
});
|
||||
|
||||
const sectionMargin = 200;
|
||||
let currentActive = 0;
|
||||
// track whether we've initialized state the first time
|
||||
let init = false;
|
||||
|
||||
const updateActiveLink = () => {
|
||||
// The index from bottom to top (e.g. reversed list)
|
||||
let sectionIndex = -1;
|
||||
if (
|
||||
window.innerHeight + window.pageYOffset >=
|
||||
window.document.body.offsetHeight
|
||||
) {
|
||||
sectionIndex = 0;
|
||||
} else {
|
||||
sectionIndex = [...sections].reverse().findIndex((section) => {
|
||||
if (section) {
|
||||
return window.pageYOffset >= section.offsetTop - sectionMargin;
|
||||
} else {
|
||||
return false;
|
||||
}
|
||||
});
|
||||
}
|
||||
if (sectionIndex > -1) {
|
||||
const current = sections.length - sectionIndex - 1;
|
||||
if (current !== currentActive) {
|
||||
removeAllActive();
|
||||
currentActive = current;
|
||||
makeActive(current);
|
||||
if (init) {
|
||||
window.dispatchEvent(sectionChanged);
|
||||
}
|
||||
init = true;
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
const inHiddenRegion = (top, bottom, hiddenRegions) => {
|
||||
for (const region of hiddenRegions) {
|
||||
if (top <= region.bottom && bottom >= region.top) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
return false;
|
||||
};
|
||||
|
||||
const categorySelector = "header.quarto-title-block .quarto-category";
|
||||
const activateCategories = (href) => {
|
||||
// Find any categories
|
||||
// Surround them with a link pointing back to:
|
||||
// #category=Authoring
|
||||
try {
|
||||
const categoryEls = window.document.querySelectorAll(categorySelector);
|
||||
for (const categoryEl of categoryEls) {
|
||||
const categoryText = categoryEl.textContent;
|
||||
if (categoryText) {
|
||||
const link = `${href}#category=${encodeURIComponent(categoryText)}`;
|
||||
const linkEl = window.document.createElement("a");
|
||||
linkEl.setAttribute("href", link);
|
||||
for (const child of categoryEl.childNodes) {
|
||||
linkEl.append(child);
|
||||
}
|
||||
categoryEl.appendChild(linkEl);
|
||||
}
|
||||
}
|
||||
} catch {
|
||||
// Ignore errors
|
||||
}
|
||||
};
|
||||
function hasTitleCategories() {
|
||||
return window.document.querySelector(categorySelector) !== null;
|
||||
}
|
||||
|
||||
function offsetRelativeUrl(url) {
|
||||
const offset = getMeta("quarto:offset");
|
||||
return offset ? offset + url : url;
|
||||
}
|
||||
|
||||
function offsetAbsoluteUrl(url) {
|
||||
const offset = getMeta("quarto:offset");
|
||||
const baseUrl = new URL(offset, window.location);
|
||||
|
||||
const projRelativeUrl = url.replace(baseUrl, "");
|
||||
if (projRelativeUrl.startsWith("/")) {
|
||||
return projRelativeUrl;
|
||||
} else {
|
||||
return "/" + projRelativeUrl;
|
||||
}
|
||||
}
|
||||
|
||||
// read a meta tag value
|
||||
function getMeta(metaName) {
|
||||
const metas = window.document.getElementsByTagName("meta");
|
||||
for (let i = 0; i < metas.length; i++) {
|
||||
if (metas[i].getAttribute("name") === metaName) {
|
||||
return metas[i].getAttribute("content");
|
||||
}
|
||||
}
|
||||
return "";
|
||||
}
|
||||
|
||||
async function findAndActivateCategories() {
|
||||
const currentPagePath = offsetAbsoluteUrl(window.location.href);
|
||||
const response = await fetch(offsetRelativeUrl("listings.json"));
|
||||
if (response.status == 200) {
|
||||
return response.json().then(function (listingPaths) {
|
||||
const listingHrefs = [];
|
||||
for (const listingPath of listingPaths) {
|
||||
const pathWithoutLeadingSlash = listingPath.listing.substring(1);
|
||||
for (const item of listingPath.items) {
|
||||
if (
|
||||
item === currentPagePath ||
|
||||
item === currentPagePath + "index.html"
|
||||
) {
|
||||
// Resolve this path against the offset to be sure
|
||||
// we already are using the correct path to the listing
|
||||
// (this adjusts the listing urls to be rooted against
|
||||
// whatever root the page is actually running against)
|
||||
const relative = offsetRelativeUrl(pathWithoutLeadingSlash);
|
||||
const baseUrl = window.location;
|
||||
const resolvedPath = new URL(relative, baseUrl);
|
||||
listingHrefs.push(resolvedPath.pathname);
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Look up the tree for a nearby linting and use that if we find one
|
||||
const nearestListing = findNearestParentListing(
|
||||
offsetAbsoluteUrl(window.location.pathname),
|
||||
listingHrefs
|
||||
);
|
||||
if (nearestListing) {
|
||||
activateCategories(nearestListing);
|
||||
} else {
|
||||
// See if the referrer is a listing page for this item
|
||||
const referredRelativePath = offsetAbsoluteUrl(document.referrer);
|
||||
const referrerListing = listingHrefs.find((listingHref) => {
|
||||
const isListingReferrer =
|
||||
listingHref === referredRelativePath ||
|
||||
listingHref === referredRelativePath + "index.html";
|
||||
return isListingReferrer;
|
||||
});
|
||||
|
||||
if (referrerListing) {
|
||||
// Try to use the referrer if possible
|
||||
activateCategories(referrerListing);
|
||||
} else if (listingHrefs.length > 0) {
|
||||
// Otherwise, just fall back to the first listing
|
||||
activateCategories(listingHrefs[0]);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
}
|
||||
if (hasTitleCategories()) {
|
||||
findAndActivateCategories();
|
||||
}
|
||||
|
||||
const findNearestParentListing = (href, listingHrefs) => {
|
||||
if (!href || !listingHrefs) {
|
||||
return undefined;
|
||||
}
|
||||
// Look up the tree for a nearby linting and use that if we find one
|
||||
const relativeParts = href.substring(1).split("/");
|
||||
while (relativeParts.length > 0) {
|
||||
const path = relativeParts.join("/");
|
||||
for (const listingHref of listingHrefs) {
|
||||
if (listingHref.startsWith(path)) {
|
||||
return listingHref;
|
||||
}
|
||||
}
|
||||
relativeParts.pop();
|
||||
}
|
||||
|
||||
return undefined;
|
||||
};
|
||||
|
||||
const manageSidebarVisiblity = (el, placeholderDescriptor) => {
|
||||
let isVisible = true;
|
||||
|
||||
return (hiddenRegions) => {
|
||||
if (el === null) {
|
||||
return;
|
||||
}
|
||||
|
||||
// Find the last element of the TOC
|
||||
const lastChildEl = el.lastElementChild;
|
||||
|
||||
if (lastChildEl) {
|
||||
// Find the top and bottom o the element that is being managed
|
||||
const elTop = el.offsetTop;
|
||||
const elBottom =
|
||||
elTop + lastChildEl.offsetTop + lastChildEl.offsetHeight;
|
||||
|
||||
// Converts the sidebar to a menu
|
||||
const convertToMenu = () => {
|
||||
for (const child of el.children) {
|
||||
child.style.opacity = 0;
|
||||
child.style.overflow = "hidden";
|
||||
}
|
||||
|
||||
const toggleContainer = window.document.createElement("div");
|
||||
toggleContainer.style.width = "100%";
|
||||
toggleContainer.classList.add("zindex-over-content");
|
||||
toggleContainer.classList.add("quarto-sidebar-toggle");
|
||||
toggleContainer.classList.add("headroom-target"); // Marks this to be managed by headeroom
|
||||
toggleContainer.id = placeholderDescriptor.id;
|
||||
toggleContainer.style.position = "fixed";
|
||||
|
||||
const toggleIcon = window.document.createElement("i");
|
||||
toggleIcon.classList.add("quarto-sidebar-toggle-icon");
|
||||
toggleIcon.classList.add("bi");
|
||||
toggleIcon.classList.add("bi-caret-down-fill");
|
||||
|
||||
const toggleTitle = window.document.createElement("div");
|
||||
const titleEl = window.document.body.querySelector(
|
||||
placeholderDescriptor.titleSelector
|
||||
);
|
||||
if (titleEl) {
|
||||
toggleTitle.append(titleEl.innerText, toggleIcon);
|
||||
}
|
||||
toggleTitle.classList.add("zindex-over-content");
|
||||
toggleTitle.classList.add("quarto-sidebar-toggle-title");
|
||||
toggleContainer.append(toggleTitle);
|
||||
|
||||
const toggleContents = window.document.createElement("div");
|
||||
toggleContents.classList = el.classList;
|
||||
toggleContents.classList.add("zindex-over-content");
|
||||
toggleContents.classList.add("quarto-sidebar-toggle-contents");
|
||||
for (const child of el.children) {
|
||||
if (child.id === "toc-title") {
|
||||
continue;
|
||||
}
|
||||
|
||||
const clone = child.cloneNode(true);
|
||||
clone.style.opacity = 1;
|
||||
clone.style.display = null;
|
||||
toggleContents.append(clone);
|
||||
}
|
||||
toggleContents.style.height = "0px";
|
||||
toggleContainer.append(toggleContents);
|
||||
el.parentElement.prepend(toggleContainer);
|
||||
|
||||
// Process clicks
|
||||
let tocShowing = false;
|
||||
// Allow the caller to control whether this is dismissed
|
||||
// when it is clicked (e.g. sidebar navigation supports
|
||||
// opening and closing the nav tree, so don't dismiss on click)
|
||||
const clickEl = placeholderDescriptor.dismissOnClick
|
||||
? toggleContainer
|
||||
: toggleTitle;
|
||||
|
||||
const closeToggle = () => {
|
||||
if (tocShowing) {
|
||||
toggleContainer.classList.remove("expanded");
|
||||
toggleContents.style.height = "0px";
|
||||
tocShowing = false;
|
||||
}
|
||||
};
|
||||
|
||||
const positionToggle = () => {
|
||||
// position the element (top left of parent, same width as parent)
|
||||
const elRect = el.getBoundingClientRect();
|
||||
toggleContainer.style.left = `${elRect.left}px`;
|
||||
toggleContainer.style.top = `${elRect.top}px`;
|
||||
toggleContainer.style.width = `${elRect.width}px`;
|
||||
};
|
||||
|
||||
// Get rid of any expanded toggle if the user scrolls
|
||||
window.document.addEventListener(
|
||||
"scroll",
|
||||
throttle(() => {
|
||||
closeToggle();
|
||||
}, 50)
|
||||
);
|
||||
|
||||
// Handle positioning of the toggle
|
||||
window.addEventListener(
|
||||
"resize",
|
||||
throttle(() => {
|
||||
positionToggle();
|
||||
}, 50)
|
||||
);
|
||||
positionToggle();
|
||||
|
||||
// Process the click
|
||||
clickEl.onclick = () => {
|
||||
if (!tocShowing) {
|
||||
toggleContainer.classList.add("expanded");
|
||||
toggleContents.style.height = null;
|
||||
tocShowing = true;
|
||||
} else {
|
||||
closeToggle();
|
||||
}
|
||||
};
|
||||
};
|
||||
|
||||
// Converts a sidebar from a menu back to a sidebar
|
||||
const convertToSidebar = () => {
|
||||
for (const child of el.children) {
|
||||
child.style.opacity = 1;
|
||||
child.style.overflow = null;
|
||||
}
|
||||
|
||||
const placeholderEl = window.document.getElementById(
|
||||
placeholderDescriptor.id
|
||||
);
|
||||
if (placeholderEl) {
|
||||
placeholderEl.remove();
|
||||
}
|
||||
|
||||
el.classList.remove("rollup");
|
||||
};
|
||||
|
||||
if (isReaderMode()) {
|
||||
convertToMenu();
|
||||
isVisible = false;
|
||||
} else {
|
||||
if (!isVisible) {
|
||||
// If the element is current not visible reveal if there are
|
||||
// no conflicts with overlay regions
|
||||
if (!inHiddenRegion(elTop, elBottom, hiddenRegions)) {
|
||||
convertToSidebar();
|
||||
isVisible = true;
|
||||
}
|
||||
} else {
|
||||
// If the element is visible, hide it if it conflicts with overlay regions
|
||||
// and insert a placeholder toggle (or if we're in reader mode)
|
||||
if (inHiddenRegion(elTop, elBottom, hiddenRegions)) {
|
||||
convertToMenu();
|
||||
isVisible = false;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
};
|
||||
|
||||
// Find any conflicting margin elements and add margins to the
|
||||
// top to prevent overlap
|
||||
const marginChildren = window.document.querySelectorAll(
|
||||
".column-margin.column-container > * "
|
||||
);
|
||||
let lastBottom = 0;
|
||||
for (const marginChild of marginChildren) {
|
||||
const top = marginChild.getBoundingClientRect().top;
|
||||
if (top < lastBottom) {
|
||||
const margin = lastBottom - top;
|
||||
marginChild.style.marginTop = `${margin}px`;
|
||||
}
|
||||
const styles = window.getComputedStyle(marginChild);
|
||||
const marginTop = parseFloat(styles["marginTop"]);
|
||||
|
||||
lastBottom = top + marginChild.getBoundingClientRect().height + marginTop;
|
||||
}
|
||||
|
||||
// Manage the visibility of the toc and the sidebar
|
||||
const marginScrollVisibility = manageSidebarVisiblity(marginSidebarEl, {
|
||||
id: "quarto-toc-toggle",
|
||||
titleSelector: "#toc-title",
|
||||
dismissOnClick: true,
|
||||
});
|
||||
const sidebarScrollVisiblity = manageSidebarVisiblity(sidebarEl, {
|
||||
id: "quarto-sidebarnav-toggle",
|
||||
titleSelector: ".title",
|
||||
dismissOnClick: false,
|
||||
});
|
||||
let tocLeftScrollVisibility;
|
||||
if (leftTocEl) {
|
||||
tocLeftScrollVisibility = manageSidebarVisiblity(leftTocEl, {
|
||||
id: "quarto-lefttoc-toggle",
|
||||
titleSelector: "#toc-title",
|
||||
dismissOnClick: true,
|
||||
});
|
||||
}
|
||||
|
||||
// Find the first element that uses formatting in special columns
|
||||
const conflictingEls = window.document.body.querySelectorAll(
|
||||
'[class^="column-"], [class*=" column-"], aside, [class*="margin-caption"], [class*=" margin-caption"], [class*="margin-ref"], [class*=" margin-ref"]'
|
||||
);
|
||||
|
||||
// Filter all the possibly conflicting elements into ones
|
||||
// the do conflict on the left or ride side
|
||||
const arrConflictingEls = Array.from(conflictingEls);
|
||||
const leftSideConflictEls = arrConflictingEls.filter((el) => {
|
||||
if (el.tagName === "ASIDE") {
|
||||
return false;
|
||||
}
|
||||
return Array.from(el.classList).find((className) => {
|
||||
return (
|
||||
className !== "column-body" &&
|
||||
className.startsWith("column-") &&
|
||||
!className.endsWith("right") &&
|
||||
!className.endsWith("container") &&
|
||||
className !== "column-margin"
|
||||
);
|
||||
});
|
||||
});
|
||||
const rightSideConflictEls = arrConflictingEls.filter((el) => {
|
||||
if (el.tagName === "ASIDE") {
|
||||
return true;
|
||||
}
|
||||
|
||||
const hasMarginCaption = Array.from(el.classList).find((className) => {
|
||||
return className == "margin-caption";
|
||||
});
|
||||
if (hasMarginCaption) {
|
||||
return true;
|
||||
}
|
||||
|
||||
return Array.from(el.classList).find((className) => {
|
||||
return (
|
||||
className !== "column-body" &&
|
||||
!className.endsWith("container") &&
|
||||
className.startsWith("column-") &&
|
||||
!className.endsWith("left")
|
||||
);
|
||||
});
|
||||
});
|
||||
|
||||
const kOverlapPaddingSize = 10;
|
||||
function toRegions(els) {
|
||||
return els.map((el) => {
|
||||
const top =
|
||||
el.getBoundingClientRect().top +
|
||||
document.documentElement.scrollTop -
|
||||
kOverlapPaddingSize;
|
||||
return {
|
||||
top,
|
||||
bottom: top + el.scrollHeight + 2 * kOverlapPaddingSize,
|
||||
};
|
||||
});
|
||||
}
|
||||
|
||||
const hideOverlappedSidebars = () => {
|
||||
marginScrollVisibility(toRegions(rightSideConflictEls));
|
||||
sidebarScrollVisiblity(toRegions(leftSideConflictEls));
|
||||
if (tocLeftScrollVisibility) {
|
||||
tocLeftScrollVisibility(toRegions(leftSideConflictEls));
|
||||
}
|
||||
};
|
||||
|
||||
window.quartoToggleReader = () => {
|
||||
// Applies a slow class (or removes it)
|
||||
// to update the transition speed
|
||||
const slowTransition = (slow) => {
|
||||
const manageTransition = (id, slow) => {
|
||||
const el = document.getElementById(id);
|
||||
if (el) {
|
||||
if (slow) {
|
||||
el.classList.add("slow");
|
||||
} else {
|
||||
el.classList.remove("slow");
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
manageTransition("TOC", slow);
|
||||
manageTransition("quarto-sidebar", slow);
|
||||
};
|
||||
|
||||
const readerMode = !isReaderMode();
|
||||
setReaderModeValue(readerMode);
|
||||
|
||||
// If we're entering reader mode, slow the transition
|
||||
if (readerMode) {
|
||||
slowTransition(readerMode);
|
||||
}
|
||||
highlightReaderToggle(readerMode);
|
||||
hideOverlappedSidebars();
|
||||
|
||||
// If we're exiting reader mode, restore the non-slow transition
|
||||
if (!readerMode) {
|
||||
slowTransition(!readerMode);
|
||||
}
|
||||
};
|
||||
|
||||
const highlightReaderToggle = (readerMode) => {
|
||||
const els = document.querySelectorAll(".quarto-reader-toggle");
|
||||
if (els) {
|
||||
els.forEach((el) => {
|
||||
if (readerMode) {
|
||||
el.classList.add("reader");
|
||||
} else {
|
||||
el.classList.remove("reader");
|
||||
}
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
const setReaderModeValue = (val) => {
|
||||
if (window.location.protocol !== "file:") {
|
||||
window.localStorage.setItem("quarto-reader-mode", val);
|
||||
} else {
|
||||
localReaderMode = val;
|
||||
}
|
||||
};
|
||||
|
||||
const isReaderMode = () => {
|
||||
if (window.location.protocol !== "file:") {
|
||||
return window.localStorage.getItem("quarto-reader-mode") === "true";
|
||||
} else {
|
||||
return localReaderMode;
|
||||
}
|
||||
};
|
||||
let localReaderMode = null;
|
||||
|
||||
// Walk the TOC and collapse/expand nodes
|
||||
// Nodes are expanded if:
|
||||
// - they are top level
|
||||
// - they have children that are 'active' links
|
||||
// - they are directly below an link that is 'active'
|
||||
const walk = (el, depth) => {
|
||||
// Tick depth when we enter a UL
|
||||
if (el.tagName === "UL") {
|
||||
depth = depth + 1;
|
||||
}
|
||||
|
||||
// It this is active link
|
||||
let isActiveNode = false;
|
||||
if (el.tagName === "A" && el.classList.contains("active")) {
|
||||
isActiveNode = true;
|
||||
}
|
||||
|
||||
// See if there is an active child to this element
|
||||
let hasActiveChild = false;
|
||||
for (child of el.children) {
|
||||
hasActiveChild = walk(child, depth) || hasActiveChild;
|
||||
}
|
||||
|
||||
// Process the collapse state if this is an UL
|
||||
if (el.tagName === "UL") {
|
||||
if (depth === 1 || hasActiveChild || prevSiblingIsActiveLink(el)) {
|
||||
el.classList.remove("collapse");
|
||||
} else {
|
||||
el.classList.add("collapse");
|
||||
}
|
||||
|
||||
// untick depth when we leave a UL
|
||||
depth = depth - 1;
|
||||
}
|
||||
return hasActiveChild || isActiveNode;
|
||||
};
|
||||
|
||||
// walk the TOC and expand / collapse any items that should be shown
|
||||
|
||||
if (tocEl) {
|
||||
walk(tocEl, 0);
|
||||
updateActiveLink();
|
||||
}
|
||||
|
||||
// Throttle the scroll event and walk peridiocally
|
||||
window.document.addEventListener(
|
||||
"scroll",
|
||||
throttle(() => {
|
||||
if (tocEl) {
|
||||
updateActiveLink();
|
||||
walk(tocEl, 0);
|
||||
}
|
||||
if (!isReaderMode()) {
|
||||
hideOverlappedSidebars();
|
||||
}
|
||||
}, 5)
|
||||
);
|
||||
window.addEventListener(
|
||||
"resize",
|
||||
throttle(() => {
|
||||
if (!isReaderMode()) {
|
||||
hideOverlappedSidebars();
|
||||
}
|
||||
}, 10)
|
||||
);
|
||||
hideOverlappedSidebars();
|
||||
highlightReaderToggle(isReaderMode());
|
||||
});
|
||||
|
||||
// grouped tabsets
|
||||
window.addEventListener("pageshow", (_event) => {
|
||||
function getTabSettings() {
|
||||
const data = localStorage.getItem("quarto-persistent-tabsets-data");
|
||||
if (!data) {
|
||||
localStorage.setItem("quarto-persistent-tabsets-data", "{}");
|
||||
return {};
|
||||
}
|
||||
if (data) {
|
||||
return JSON.parse(data);
|
||||
}
|
||||
}
|
||||
|
||||
function setTabSettings(data) {
|
||||
localStorage.setItem(
|
||||
"quarto-persistent-tabsets-data",
|
||||
JSON.stringify(data)
|
||||
);
|
||||
}
|
||||
|
||||
function setTabState(groupName, groupValue) {
|
||||
const data = getTabSettings();
|
||||
data[groupName] = groupValue;
|
||||
setTabSettings(data);
|
||||
}
|
||||
|
||||
function toggleTab(tab, active) {
|
||||
const tabPanelId = tab.getAttribute("aria-controls");
|
||||
const tabPanel = document.getElementById(tabPanelId);
|
||||
if (active) {
|
||||
tab.classList.add("active");
|
||||
tabPanel.classList.add("active");
|
||||
} else {
|
||||
tab.classList.remove("active");
|
||||
tabPanel.classList.remove("active");
|
||||
}
|
||||
}
|
||||
|
||||
function toggleAll(selectedGroup, selectorsToSync) {
|
||||
for (const [thisGroup, tabs] of Object.entries(selectorsToSync)) {
|
||||
const active = selectedGroup === thisGroup;
|
||||
for (const tab of tabs) {
|
||||
toggleTab(tab, active);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
function findSelectorsToSyncByLanguage() {
|
||||
const result = {};
|
||||
const tabs = Array.from(
|
||||
document.querySelectorAll(`div[data-group] a[id^='tabset-']`)
|
||||
);
|
||||
for (const item of tabs) {
|
||||
const div = item.parentElement.parentElement.parentElement;
|
||||
const group = div.getAttribute("data-group");
|
||||
if (!result[group]) {
|
||||
result[group] = {};
|
||||
}
|
||||
const selectorsToSync = result[group];
|
||||
const value = item.innerHTML;
|
||||
if (!selectorsToSync[value]) {
|
||||
selectorsToSync[value] = [];
|
||||
}
|
||||
selectorsToSync[value].push(item);
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
function setupSelectorSync() {
|
||||
const selectorsToSync = findSelectorsToSyncByLanguage();
|
||||
Object.entries(selectorsToSync).forEach(([group, tabSetsByValue]) => {
|
||||
Object.entries(tabSetsByValue).forEach(([value, items]) => {
|
||||
items.forEach((item) => {
|
||||
item.addEventListener("click", (_event) => {
|
||||
setTabState(group, value);
|
||||
toggleAll(value, selectorsToSync[group]);
|
||||
});
|
||||
});
|
||||
});
|
||||
});
|
||||
return selectorsToSync;
|
||||
}
|
||||
|
||||
const selectorsToSync = setupSelectorSync();
|
||||
for (const [group, selectedName] of Object.entries(getTabSettings())) {
|
||||
const selectors = selectorsToSync[group];
|
||||
// it's possible that stale state gives us empty selections, so we explicitly check here.
|
||||
if (selectors) {
|
||||
toggleAll(selectedName, selectors);
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
function throttle(func, wait) {
|
||||
let waiting = false;
|
||||
return function () {
|
||||
if (!waiting) {
|
||||
func.apply(this, arguments);
|
||||
waiting = true;
|
||||
setTimeout(function () {
|
||||
waiting = false;
|
||||
}, wait);
|
||||
}
|
||||
};
|
||||
}
|
|
@ -0,0 +1 @@
|
|||
.tippy-box[data-animation=fade][data-state=hidden]{opacity:0}[data-tippy-root]{max-width:calc(100vw - 10px)}.tippy-box{position:relative;background-color:#333;color:#fff;border-radius:4px;font-size:14px;line-height:1.4;white-space:normal;outline:0;transition-property:transform,visibility,opacity}.tippy-box[data-placement^=top]>.tippy-arrow{bottom:0}.tippy-box[data-placement^=top]>.tippy-arrow:before{bottom:-7px;left:0;border-width:8px 8px 0;border-top-color:initial;transform-origin:center top}.tippy-box[data-placement^=bottom]>.tippy-arrow{top:0}.tippy-box[data-placement^=bottom]>.tippy-arrow:before{top:-7px;left:0;border-width:0 8px 8px;border-bottom-color:initial;transform-origin:center bottom}.tippy-box[data-placement^=left]>.tippy-arrow{right:0}.tippy-box[data-placement^=left]>.tippy-arrow:before{border-width:8px 0 8px 8px;border-left-color:initial;right:-7px;transform-origin:center left}.tippy-box[data-placement^=right]>.tippy-arrow{left:0}.tippy-box[data-placement^=right]>.tippy-arrow:before{left:-7px;border-width:8px 8px 8px 0;border-right-color:initial;transform-origin:center right}.tippy-box[data-inertia][data-state=visible]{transition-timing-function:cubic-bezier(.54,1.5,.38,1.11)}.tippy-arrow{width:16px;height:16px;color:#333}.tippy-arrow:before{content:"";position:absolute;border-color:transparent;border-style:solid}.tippy-content{position:relative;padding:5px 9px;z-index:1}
|
2
R/chapter-3-beta-binomial/ch3-beta-binomial_files/libs/quarto-html/tippy.umd.min.js
vendored
Normal file
2
R/chapter-3-beta-binomial/ch3-beta-binomial_files/libs/quarto-html/tippy.umd.min.js
vendored
Normal file
File diff suppressed because one or more lines are too long
|
@ -0,0 +1,6 @@
|
|||
@import url('https://fonts.googleapis.com/css?family=Lora&display=swap');
|
||||
@import url('https://fonts.googleapis.com/css?family=Source+Code+Pro&display=swap');
|
||||
|
||||
body {
|
||||
font-family: 'Lora';
|
||||
}
|
Loading…
Reference in New Issue